...... /import/webshare/w3dna/X3DNA_2.0/config/ ...... ...... reading file: atomlist.dat ...... ...... /import/webshare/w3dna/X3DNA_2.0/config/ ...... ...... reading file: atomlist.dat ...... ...... /import/webshare/w3dna/X3DNA_2.0/config/ ...... ...... reading file: atomlist.dat ...... ...... /import/webshare/w3dna/X3DNA_2.0/config/ ...... ...... reading file: atomlist.dat ...... ...... /import/webshare/w3dna/X3DNA_2.0/config/ ...... ...... reading file: atomlist.dat ...... ...... /import/webshare/w3dna/X3DNA_2.0/config/ ...... ...... reading file: baselist.dat ...... ...... /import/webshare/w3dna/X3DNA_2.0/config/ ...... ...... /import/webshare/w3dna/X3DNA_2.0/config/ ...... ...... reading file: baselist.dat ...... ...... /import/webshare/w3dna/X3DNA_2.0/config/ ...... ...... reading file: atomlist.dat ...... ...... /import/webshare/w3dna/X3DNA_2.0/config/ ...... ...... reading file: raster3d.par ...... ...... scale factor: 86.51 ...... ...... /import/webshare/w3dna/X3DNA_2.0/config/ ...... ...... reading file: my_header.r3d ...... ...... /import/webshare/w3dna/X3DNA_2.0/config/ ...... ...... reading file: atomlist.dat ...... ...... /import/webshare/w3dna/X3DNA_2.0/config/ ...... ...... reading file: atomlist.dat ...... ...... /import/webshare/w3dna/X3DNA_2.0/config/ ...... ...... reading file: baselist.dat ...... ...... /import/webshare/w3dna/X3DNA_2.0/config/ ...... ...... reading file: atomlist.dat ...... ...... /import/webshare/w3dna/X3DNA_2.0/config/ ...... ...... reading file: raster3d.par ...... ...... /import/webshare/w3dna/X3DNA_2.0/config/ ...... ...... reading file: baselist.dat ...... ...... /import/webshare/w3dna/X3DNA_2.0/config/ ...... ...... /import/webshare/w3dna/X3DNA_2.0/config/ ...... ...... /import/webshare/w3dna/X3DNA_2.0/config/ ...... ...... reading file: raster3d.par ...... ...... /import/webshare/w3dna/X3DNA_2.0/config/ ...... ...... reading file: atomlist.dat ...... ...... /import/webshare/w3dna/X3DNA_2.0/config/ ...... ...... reading file: atomlist.dat ...... ...... /import/webshare/w3dna/X3DNA_2.0/config/ ...... ...... reading file: col_mname.dat ...... ...... /import/webshare/w3dna/X3DNA_2.0/config/ ...... ...... reading file: col_chain.dat ...... read in coil radius: 0.80 Expt. chains (4) ABCD PPNN ----- MolScript v2.1.2, Copyright (C) 1997-1998 Per J. Kraulis ----- ref: P.J. Kraulis, J. Appl. Cryst. (1991) vol 24, pp 946-950 ----- http://www.avatar.se/molscript/ reading PDB file... 414 residues and 3550 atoms read into molecule mol coil from A98 to A107 (10 residues) strand from A107 to A110 (4 residues) coil from A110 to A116 (7 residues) helix from A116 to A118 (3 residues) coil from A118 to A121 (4 residues) strand from A121 to A124 (4 residues) coil from A124 to A129 (6 residues) strand from A129 to A132 (4 residues) coil from A132 to A138 (7 residues) strand from A138 to A143 (6 residues) coil from A143 to A153 (11 residues) strand from A153 to A160 (8 residues) coil from A160 to A174 (15 residues) helix from A174 to A177 (4 residues) coil from A177 to A192 (16 residues) strand from A192 to A195 (4 residues) coil from A195 to A201 (7 residues) strand from A201 to A204 (4 residues) coil from A204 to A211 (8 residues) strand from A211 to A216 (6 residues) coil from A216 to A227 (12 residues) strand from A227 to A233 (7 residues) coil from A233 to A248 (16 residues) strand from A248 to A255 (8 residues) coil from A255 to A264 (10 residues) strand from A264 to A271 (8 residues) coil from A271 to A275 (5 residues) helix from A275 to A287 (13 residues) coil from A287 to A291 (5 residues) coil from B96 to B107 (12 residues) strand from B107 to B110 (4 residues) coil from B110 to B116 (7 residues) helix from B116 to B118 (3 residues) coil from B118 to B121 (4 residues) strand from B121 to B124 (4 residues) coil from B124 to B129 (6 residues) strand from B129 to B132 (4 residues) coil from B132 to B138 (7 residues) strand from B138 to B143 (6 residues) coil from B143 to B153 (11 residues) strand from B153 to B160 (8 residues) coil from B160 to B174 (15 residues) helix from B174 to B177 (4 residues) coil from B177 to B192 (16 residues) strand from B192 to B195 (4 residues) coil from B195 to B201 (7 residues) strand from B201 to B204 (4 residues) coil from B204 to B211 (8 residues) strand from B211 to B216 (6 residues) coil from B216 to B227 (12 residues) strand from B227 to B233 (7 residues) coil from B233 to B248 (16 residues) strand from B248 to B255 (8 residues) coil from B255 to B264 (10 residues) strand from B264 to B271 (8 residues) coil from B271 to B275 (5 residues) helix from B275 to B286 (12 residues) coil from B286 to B289 (4 residues) double-helix from C13 to C23 (11 residues) double-helix from D2 to D12 (11 residues) setting window to 95.25 setting slab to 114.80 3856 triangles, 0 spheres and 3668 cylinders. ----- MolScript v2.1.2, Copyright (C) 1997-1998 Per J. Kraulis ----- ref: P.J. Kraulis, J. Appl. Cryst. (1991) vol 24, pp 946-950 ----- http://www.avatar.se/molscript/ ...... /import/webshare/w3dna/X3DNA_2.0/config/ ...... ...... reading file: atomlist.dat ...... ...... /import/webshare/w3dna/X3DNA_2.0/config/ ...... ...... reading file: atomlist.dat ...... ...... /import/webshare/w3dna/X3DNA_2.0/config/ ...... ...... reading file: baselist.dat ...... ...... /import/webshare/w3dna/X3DNA_2.0/config/ ...... ...... reading file: atomlist.dat ...... ...... /import/webshare/w3dna/X3DNA_2.0/config/ ...... ...... reading file: raster3d.par ...... ...... /import/webshare/w3dna/X3DNA_2.0/config/ ...... ...... reading file: baselist.dat ...... ...... /import/webshare/w3dna/X3DNA_2.0/config/ ...... ...... reading file: atomlist.dat ...... ...... /import/webshare/w3dna/X3DNA_2.0/config/ ...... ...... reading file: raster3d.par ...... rendering time - 0 sec title="3DNA v2.0 (2007-08-20, by Dr. Xiang-Jun Lu; 3dna.lu@gmail.com)" Rendered raster size = 960 x 960 Output raster size = 640 x 640 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % Raster3D V3.0.3 % % -------------------------------------- % % If you publish figures generated by this program please cite % % Merritt & Bacon (1997) Meth. Enzymol. 277, 505-524. % % -------------------------------------- % % Raster3D distribution site % % http://www.bmsc.washington.edu/raster3d/ % % comments & suggestions to: merritt@u.washington.edu % %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% To center objects in rendered scene, change translation to: -7.8300 21.9700 -22.8400 Z limits (unscaled) before clipping: -30.49 39.44 Z-clipping limits: -86.60 none ------------------------------- spheres = 15 cylinders = 2587 plain triangles = 628 ribbon triangles = 1312 surface triangles = 2192 inside surfaces = 1048 total objects = 8926 ------------------------------- ***** Scale factor used: ===> 86.51 <===