handling file <Z-G4R_refine_38_clean.pdb>
File </import/webshare/w3dna/X3DNA_2.0/config/misc_3dna.par> does NOT contain any valid xml tags for parameters
	maybe it is in the previous v1.5 version?
	so system default setting is used here...

 ...... /import/webshare/w3dna/X3DNA_2.0/config/ ...... 
 ...... reading file: misc_3dna.par ...... 

 ...... /import/webshare/w3dna/X3DNA_2.0/config/ ...... 
 ...... reading file: baselist.dat ...... 

 ...... /import/webshare/w3dna/X3DNA_2.0/config/ ...... 
 ...... reading file: atomlist.dat ...... 

 ...... /import/webshare/w3dna/X3DNA_2.0/config/ ...... 

 ...... /import/webshare/w3dna/X3DNA_2.0/config/ ...... 
 ...... reading file: atomlist.dat ...... 
[swapping 2nd & 3rd]    4     4.56     3.67     3.16     3.14
***Warning: structure with 2 neighbor bps co-planar ***
[7 8]: complicated structure, left over base-pairs put into the last region [3]
000:    [8-5]

Time used: 00:00:00:00